Data production models for the CDF experiment

The data production for the CDF experiment is conducted on a large Linux PC farm designed to meet the needs of data collection at a maximum rate of 40 MByte/sec. We present two data production models that exploits advances in computing and communication technology. The first production farm is a centralized system that has achieved a stable data processing rate of approximately 2 TByte per day. The recently upgraded farm is migrated to the SAM (Sequential Access to data via Metadata) data handling system. The software and hardware of the CDF production farms has been successful in providing large computing and data throughput capacity to the experiment.Comment: 8 pages, 9 figures; presented at HPC Asia2005, Beijing, China, Nov 30 - Dec 3, 200

Data processing model for the CDF experiment

The data processing model for the CDF experiment is described. Data processing reconstructs events from parallel data streams taken with different combinations of physics event triggers and further splits the events into datasets of specialized physics datasets. The design of the processing control system faces strict requirements on bookkeeping records, which trace the status of data files and event contents during processing and storage. The computing architecture was updated to meet the mass data flow of the Run II data collection, recently upgraded to a maximum rate of 40 MByte/sec. The data processing facility consists of a large cluster of Linux computers with data movement managed by the CDF data handling system to a multi-petaByte Enstore tape library. The latest processing cycle has achieved a stable speed of 35 MByte/sec (3 TByte/day). It can be readily scaled by increasing CPU and data-handling capacity as required.Comment: 12 pages, 10 figures, submitted to IEEE-TN

A study of observation scales based on Felzenswalb-Huttenlocher dissimilarity measure for hierarchical segmentation

International audienceHierarchical image segmentation provides a region-oriented scale-space, i.e., a set of image segmentations at different detail levels in which the segmentations at finer levels are nested with respect to those at coarser levels. Guimarães et al. proposed a hierarchical graph based image segmentation (HGB) method based on the Felzenszwalb-Huttenlocher dissimilarity. This HGB method computes, for each edge of a graph, the minimum scale in a hierarchy at which two regions linked by this edge should merge according to the dissimilarity. In order to generalize this method, we first propose an algorithm to compute the intervals which contain all the observation scales at which the associated regions should merge. Then, following the current trend in mathematical morphology to study criteria which are not increasing on a hierarchy, we present various strategies to select a significant observation scale in these intervals. We use the BSDS dataset to assess our observation scale selection methods. The experiments show that some of these strategies lead to better segmentation results than the ones obtained with the original HGB method

Extremely rapid up-and-down motions of island arc crust during arc-continent collision

10 pagesMountain building and the rock cycle often involve large vertical crustal motions, but their rates and timescales in unmetamorphosed rocks remain poorly understood. We utilize high-resolution magneto-biostratigraphy and backstripping analysis of marine deposits in an active arc-continent suture zone of eastern Taiwan to document short cycles of vertical crustal oscillations. A basal unconformity formed on Miocene volcanic arc crust in an uplifting forebulge starting ~6 Ma, followed by rapid foredeep subsidence at 2.3–3.2 mm yr−1 (~3.4–0.5 Ma) in response to oceanward-migrating flexural wave. Since ~0.8–0.5 Ma, arc crust has undergone extremely rapid (~9.0–14.4 mm yr−1) uplift to form the modern Coastal Range during transpressional strain. The northern sector may have recently entered another phase of subsidence related to a subduction polarity reversal. These transient vertical crustal motions are under-detected by thermochronologic methods, but are likely characteristic of continental growth by arc accretion over geologic timescales

Hierarchical colour image segmentation by leveraging RGB channels independently

In this paper, we introduce a hierarchical colour image segmentation based on cuboid partitioning using simple statistical features of the pixel intensities in the RGB channels. Estimating the difference between any two colours is a challenging task. As most of the colour models are not perceptually uniform, investigation of an alternative strategy is highly demanding. To address this issue, for our proposed technique, we present a new concept for colour distance measure based on the inconsistency of pixel intensities of an image which is more compliant to human perception. Constructing a reliable set of superpixels from an image is fundamental for further merging. As cuboid partitioning is a superior candidate to produce superpixels, we use the agglomerative merging to yield the final segmentation results exploiting the outcome of our proposed cuboid partitioning. The proposed cuboid segmentation based algorithm significantly outperforms not only the quadtree-based segmentation but also existing state-of-the-art segmentation algorithms in terms of quality of segmentation for the benchmark datasets used in image segmentation. © 2019, Springer Nature Switzerland AG

Current polarity-dependent manipulation of antiferromagnetic domains

Antiferromagnets have several favourable properties as active elements in spintronic devices, including ultra-fast dynamics, zero stray fields and insensitivity to external magnetic fields. Tetragonal CuMnAs is a testbed system in which the antiferromagnetic order parameter can be switched reversibly at ambient conditions using electrical currents. In previous experiments, orthogonal in-plane current pulses were used to induce 90° rotations of antiferromagnetic domains and demonstrate the operation of all-electrical memory bits in a multi-terminal geometry. Here, we demonstrate that antiferromagnetic domain walls can be manipulated to realize stable and reproducible domain changes using only two electrical contacts. This is achieved by using the polarity of the current to switch the sign of the current-induced effective field acting on the antiferromagnetic sublattices. The resulting reversible domain and domain wall reconfigurations are imaged using X-ray magnetic linear dichroism microscopy, and can also be detected electrically. Switching by domain-wall motion can occur at much lower current densities than those needed for coherent domain switching

Predicting the protein-protein interactions using primary structures with predicted protein surface

<p>Abstract</p> <p>Background</p> <p>Many biological functions involve various protein-protein interactions (PPIs). Elucidating such interactions is crucial for understanding general principles of cellular systems. Previous studies have shown the potential of predicting PPIs based on only sequence information. Compared to approaches that require other auxiliary information, these sequence-based approaches can be applied to a broader range of applications.</p> <p>Results</p> <p>This study presents a novel sequence-based method based on the assumption that protein-protein interactions are more related to amino acids at the surface than those at the core. The present method considers surface information and maintains the advantage of relying on only sequence data by including an accessible surface area (ASA) predictor recently proposed by the authors. This study also reports the experiments conducted to evaluate a) the performance of PPI prediction achieved by including the predicted surface and b) the quality of the predicted surface in comparison with the surface obtained from structures. The experimental results show that surface information helps to predict interacting protein pairs. Furthermore, the prediction performance achieved by using the surface estimated with the ASA predictor is close to that using the surface obtained from protein structures.</p> <p>Conclusion</p> <p>This work presents a sequence-based method that takes into account surface information for predicting PPIs. The proposed procedure of surface identification improves the prediction performance with an <it>F-measure </it>of 5.1%. The extracted surfaces are also valuable in other biomedical applications that require similar information.</p